Well for the moment I used TAB instead of caps Lock. The main idea is to have the main actions of each unit/building on space and TAB. E.g. : for a villager, build economic is on space and for the TC, creating vills is on space.
I only configured 10 control groups, I barely use more than 3-4 usually.
And I assigned the go to keys to alt + control group keys. (Like the camera hotkeys in the core in starcraft).
I haven’t played multiplayer yet though, I want to get confortable with this new setup first.
I am having no trouble assigning the F-keys. I have assigned F1 to select idle villager and F2 to select all military buildings and also moved show tech tree to F6 or something. Maybe autohotkey is not interfering with assigning the F keys.